| Pos | Car # | Class | Team | Drivers | Car | Result | Qual.Time |
| 1 | 38 | GT500 | Toyota Team Cerumo | Hironori Takeuchi/Yuji Tachikawa/Shigekazu Wakisaki | Toyota Supra | 6h07m29.393, 171 laps, 163.58 kph | 2:00.321 |
| 2 | 1 | GT500 | Loctite Mugen NSX | Ryo Michigami/Daisuke Ito/Hidetoshi Mitsusada | Honda NSX-S | 6h07m43.847, 171 laps | 2:00.849 |
| 3 | 30 | GT500 | Team Take One | Hideki Okada/Andre Couto/Richard Lyons | McLaren F1 GTR | 170 laps | 2:02.278 |
| 4 | 18 | GT500 | Takata | Sabastien Philippe/Katsutomo Kaneishi/Shinya Hosokawa | Honda NSX-S | 170 laps | 2:01.860 |
| 5 | 39 | GT500 | iDC Sard Racing Team | Romain Dumas/Manabu Orido/Seiji Ara | Toyota Supra | 164 laps | 2:03.225 |
| 6 | 72 | INT | Team Taisan Advan | Hideo Fukuyama/Atsushi Yogo/Kazuyuki Nishizawa | Porsche 911 GT3R | 157 laps | 2:12.651 |
| 7 | 81 | GT300 | Advan | Nobuyuki Oyagi/Takayuki Aoki/Hisashi Yokoshima | Nissan Silvia | 157 laps | 2:11.308 |
| 8 | 71 | GT300 | MR-S | Gattsu Jyonai/Eiichi Tajima/Haruki Kurosawa | Toyota MR-S | 156 laps | 2:12.727 |
| 9 | 26 | GT300 | Team Taisan Advan | Hideshi Matsuda/Takaji Suzuki/Andrew Bagnall | Porsche 911 GT3R | 154 laps | 2:14.587 |
| 10 | 70 | GT300 | Team Gaikokuya | Yoshimi Ishibashi/Patrick van Schoote/Kaoru Hoshino | Porsche 911 GT3RS | 150 laps | 2:14.818 |
| 11 | 22 | RS | YRP | Masaki Yamamoto/Katsunori Yamamoto/Naoto Chikada | Oscar SK5.2 | 150 laps | 2:12.865 |
| 12 | 3 | C-GT | 910Racing | Akira Hirakawa/Toshihide Hashimura/Adam Wilcox | Porsche 996 GT3 Cup | 150 laps | 2:18.172 |
| 13 | 28 | GT300 | 28 NSX | Kazuho Takahashi/Hiroshi Kimura/Hisashi Tsukahara | Honda NSX | 148 laps | 2:18.628 |
| 14 | 20 | S-E | RS Advan | Nobuo Komiya/Yoshinari Tomimoto/Park Jung Yong | Lancer Evo. Vl | 146 laps | 2:26.063 |
| 15 | 901 | GT300 | A&S Racing | Katsunori Iketani/Kunisuke Sadakata | MT900R | 146 laps | 2:17.577 |
| 16 | 9 | GT300 | Team ARC | Tsunefumi Hioki/Akihiko Tsutsumi/Yukihiro Hane | Porsche 911 GT3R | 145 laps | 2:15.605 |
| 17 | 55 | INT | Rollcentre Racing with Mole Valley/Xavex | Martin Short/Rob Barff/Richard Stanton | TVR Tuscan R | 144 laps | 2:14.985 |
| 18 | 355 | INT | Yellow Magic | Toshio Suzuki/Shinichi Asami | Ferrari F355 | 144 laps | 2:16.264 |
| 19 | 29 | INT | Chamberlain Motorsport | Geoff Lister/Stephen Watson/Ben Devlin | Chrysler Viper GTS-R | 143 laps | 2:08.029 |
| 20 | 36 | S-E | C-WEST S2000 | Kenya Nagano/Daiki Yoshimoto/Shinichi Hyodo | Honda S2000 | 143 laps | 2:24.832 |
| 21 | 6 | S-E | Tsuguo Yagyu/Tomohiro Tomimasu | Mitsubishi Lancer Evo. Vl | 140 laps | 2:23.842 | |
| 22 | 280 | C-GT | Dream 28 | Hajime Oshiro/Mitsuo Tomita/Masataka Matsuyama | Honda NSX | 133 laps | 2:25.920 |
| 23 | 45 | S-E | FK Advan | Takeo Asano/Tomoyuki Kasahara | Honda Civic Type R | 130 laps | 2:32.199 |
| 24 | 15 | RS | Team NCK | Hidetoshi Nishimura/Takahiro Ogawa | Oscar SK5.2 | 129 laps | 2:12.328 |
| 25 | 87 | S-E | BP DC2 | Toshikazu Kanamori/Michihiko Hashimoto/Tatsufumi Iwatsuki | Honda Integra Type R | 128 laps | 2:35.311 |
| 26 | 930 | C-GT | M`s Machine Works | Eiji Yamada/Yasuo Miyagawa/Shigemitsu Haga | Porsche 911 | 117 laps | 2:15.329 |
| 27 | 360 | GT300 | Dentaire Projet Racing | Kota Sasaki/Seigo Nishizawa/Jun Nakamura | Ferrari 360 GT | 111 laps | 2:14.775 |
| 28 | 19 | S-E | JMC Racing Division | Toshiaki Koshimizu/Masayuki Ueda/Yutaka Seki | Nissan Skyline GT-R | 106 laps | 2:23.869 |
| R | 65 | GT300 | Amprex Motor Sport | Genji Hashimoto/Charles Kwan Shiu Cheong | Mazda RX-7 | 104 laps | 2:15.357 |
| R | 8 | RS | Tomiko Yoshikawa/Yoshimi Kaku/Naoko Ogiwara | Oscar SK5.2 | 94 laps | 2:12.454 | |
| R | 88 | GT500 | Nomad Diablo GT | Naohiro Furuya/Hisashi Wada/Yasukata Hinoi | Lamborghini JGT1 | 89 laps | 2:09.370 |
| R | 11 | GT300 | Team Gainer | Junichi Ikura/Koji Ushikubo/Takahiko Date | Porsche 911 GT3R | 73 laps | 2:14.388 |
| R | 98 | S-E | M`S Altia GTR | Syunji Kasuya/Kenji Kawagoe | Skyline GT-R | 65 laps | 2:22.228 |
| R | 5 | S-E | STP GTR | Kyoshi Misaki/Hideaki Ichimura/Hidetoshi Moriya | Skyline GT-R | 45 laps | 2:21.379 |
| R | 60 | INT | Marcos Racing International | Cor Euser/Jun Harada/Ian McKellar | Marcos LM600 | 20 laps | 2:08.656 |